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» Data-Flow Analysis for MPI Programs
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IPPS
2010
IEEE
13 years 2 months ago
Performance modeling of heterogeneous systems
Predicting how well applications may run on modern systems is becoming increasingly challenging. It is no longer sufficient to look at number of floating point operations and commu...
Jan Christian Meyer, Anne C. Elster
BMCBI
2008
125views more  BMCBI 2008»
13 years 5 months ago
SNPLims: a data management system for genome wide association studies
Background: Recent progresses in genotyping technologies allow the generation high-density genetic maps using hundreds of thousands of genetic markers for each DNA sample. The ava...
Alessandro Orro, Guia Guffanti, Erika Salvi, Fabio...
WCE
2007
13 years 6 months ago
Sparse Matrix Multiplication Using UPC
—Partitioned global address space (PGAS) languages, such as Unified Parallel C (UPC) have the promise of being productive. Due to the shared address space view that they provide,...
Hoda El-Sayed, Eric Wright
CGO
2009
IEEE
13 years 9 months ago
Communication-Sensitive Static Dataflow for Parallel Message Passing Applications
Message passing is a very popular style of parallel programming, used in a wide variety of applications and supported by many APIs, such as BSD sockets, MPI and PVM. Its importance...
Greg Bronevetsky
BMCBI
2006
179views more  BMCBI 2006»
13 years 5 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...