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NAR
2010
202views more  NAR 2010»
12 years 12 months ago
dbDEPC: a database of Differentially Expressed Proteins in human Cancers
Cancer-related investigations have long been in the limelight of biomedical research. Years of effort from scientists and doctors worldwide have generated large amounts of data at...
Hong Li, Ying He, Guohui Ding, Chuan Wang, Lu Xie,...
BMCBI
2002
137views more  BMCBI 2002»
13 years 5 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
DATESO
2007
157views Database» more  DATESO 2007»
13 years 6 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
NAR
2000
103views more  NAR 2000»
13 years 5 months ago
The Homeodomain Resource: a prototype database for a large protein family
The Homeodomain Resource is an annotated collection of non-redundant protein sequences, three-dimensional structures and genomic information for the homeodomain protein family. Re...
Sharmila Banerjee-Basu, Joseph F. Ryan, Andreas D....
BIRTHDAY
2010
Springer
13 years 10 months ago
Indexing and Searching a Mass Spectrometry Database
Abstract. Database preprocessing in order to create an index often permits considerable speedup in search compared to the iterated query of an unprocessed database. In this paper w...
Søren Besenbacher, Benno Schwikowski, Jens ...