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CORR
2008
Springer
104views Education» more  CORR 2008»
13 years 4 months ago
De Bruijn Graph Homomorphisms and Recursive De Bruijn Sequences
This paper presents a method to find new De Bruijn cycles based on ones of lesser order. This is done by mapping a De Bruijn cycle to several vertex disjoint cycles in a De Bruijn ...
Abbas Alhakim, Mufutau Akinwande
WG
2004
Springer
13 years 9 months ago
Minimal de Bruijn Sequence in a Language with Forbidden Substrings
Let be the following strategy to construct a walk in a labeled digraph: at each vertex, we follow the unvisited arc of minimum label. In this work we study for which languages, app...
Eduardo Moreno, Martín Matamala
GC
2008
Springer
13 years 4 months ago
Error Correcting Sequence and Projective De Bruijn Graph
Mariko Hagita, Makoto Matsumoto, Fumio Natsu, Yuki...
BMCBI
2010
189views more  BMCBI 2010»
13 years 4 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
13 years 10 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...