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» Decision problem for shuffled genes
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CAP
2010
13 years 23 days ago
Parallel disk-based computation for large, monolithic binary decision diagrams
Binary Decision Diagrams (BDDs) are widely used in formal verification. They are also widely known for consuming large amounts of memory. For larger problems, a BDD computation wi...
Daniel Kunkle, Vlad Slavici, Gene Cooperman
BMCBI
2005
147views more  BMCBI 2005»
13 years 5 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
BMCBI
2007
128views more  BMCBI 2007»
13 years 5 months ago
A Bayesian nonparametric method for prediction in EST analysis
Background: Expressed sequence tags (ESTs) analyses are a fundamental tool for gene identification in organisms. Given a preliminary EST sample from a certain library, several sta...
Antonio Lijoi, Ramsés H. Mena, Igor Prü...
BMCBI
2010
117views more  BMCBI 2010»
13 years 5 months ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...
MCS
2009
Springer
14 years 16 days ago
True Path Rule Hierarchical Ensembles
Abstract. Hierarchical classification problems gained increasing attention within the machine learning community, and several methods for hierarchically structured taxonomies have...
Giorgio Valentini