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BMCBI
2010
123views more  BMCBI 2010»
13 years 5 months ago
Decoding HMMs using the k best paths: algorithms and applications
Background: Traditional algorithms for hidden Markov model decoding seek to maximize either the probability of a state path or the number of positions of a sequence assigned to th...
Daniel G. Brown 0001, Daniil Golod
CORR
2010
Springer
136views Education» more  CORR 2010»
13 years 2 months ago
The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection
Abstract. Hidden Markov models are traditionally decoded by the Viterbi algorithm which finds the highest probability state path in the model. In recent years, several limitations ...
Michal Nánási, Tomás Vinar, B...
JCP
2007
143views more  JCP 2007»
13 years 4 months ago
Noisy K Best-Paths for Approximate Dynamic Programming with Application to Portfolio Optimization
Abstract— We describe a general method to transform a non-Markovian sequential decision problem into a supervised learning problem using a K-bestpaths algorithm. We consider an a...
Nicolas Chapados, Yoshua Bengio
BMCBI
2010
117views more  BMCBI 2010»
13 years 5 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
CPM
2007
Springer
99views Combinatorics» more  CPM 2007»
13 years 11 months ago
Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions
We present a method to speed up the dynamic program algorithms used for solving the HMM decoding and training problems for discrete time-independent HMMs. We discuss the applicatio...
Shay Mozes, Oren Weimann, Michal Ziv-Ukelson