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» Dendroscope: An interactive viewer for large phylogenetic tr...
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BMCBI
2007
160views more  BMCBI 2007»
13 years 5 months ago
Dendroscope: An interactive viewer for large phylogenetic trees
Background: Research in evolution requires software for visualizing and editing phylogenetic trees, for increasingly very large datasets, such as arise in expression analysis or m...
Daniel H. Huson, Daniel C. Richter, Christian Raus...
NAR
2006
120views more  NAR 2006»
13 years 4 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...
BMCBI
2007
162views more  BMCBI 2007»
13 years 5 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
GD
1998
Springer
13 years 9 months ago
Drawing Large Graphs with H3Viewer and Site Manager
We demonstrate the H3Viewer graph drawing library, which can be run from a standalone program or in conjunction with other programs such as SGI's Site Manager application. Our...
Tamara Munzner
NAR
2006
71views more  NAR 2006»
13 years 4 months ago
TSEMA: interactive prediction of protein pairings between interacting families
An entire family of methodologies for predicting protein interactions is based on the observed fact that families of interacting proteins tend to have similar phylogenetic trees d...
José M. G. Izarzugaza, David de Juan, Carle...