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CORR
2010
Springer
136views Education» more  CORR 2010»
13 years 4 months ago
Detecting Inconsistencies in Large Biological Networks with Answer Set Programming
Abstract. We introduce an approach to detecting inconsistencies in large biological networks by using Answer Set Programming. To this end, we build upon a recently proposed notion ...
Martin Gebser, Torsten Schaub, Sven Thiele, Philip...
KR
2010
Springer
13 years 9 months ago
Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming
We address the problem of repairing large-scale biological networks and corresponding yet often discrepant measurements in order to predict unobserved variations. To this end, we ...
Martin Gebser, Carito Guziolowski, Mihail Ivanchev...
ICTAI
2010
IEEE
13 years 2 months ago
The BioASP Library: ASP Solutions for Systems Biology
Abstract--Today's molecular biology is confronted with enormous amounts of data, generated by new high-throughput technologies, along with an increasing number of biological m...
Martin Gebser, Arne König, Torsten Schaub, Sv...
CCIA
2007
Springer
13 years 10 months ago
Mendelian error detection in complex pedigrees using weighted constraint satisfaction techniques
With the arrival of high throughput genotyping techniques, the detection of likely genotyping errors is becoming an increasingly important problem. In this paper we are interested...
Martí Sánchez, Simon de Givry, Thoma...
BMCBI
2010
229views more  BMCBI 2010»
13 years 4 months ago
Mocapy++ - A toolkit for inference and learning in dynamic Bayesian networks
Background: Mocapy++ is a toolkit for parameter learning and inference in dynamic Bayesian networks (DBNs). It supports a wide range of DBN architectures and probability distribut...
Martin Paluszewski, Thomas Hamelryck