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JCC
2002
79views more  JCC 2002»
13 years 4 months ago
Distance and exposure dependent effective dielectric function
: In an effort to develop a dielectric screening function for molecular dynamics simulations of biomolecules in implicit solvent, effective dielectric constants (Deff) for a large ...
Buddhadeb Mallik, Artëm Masunov, Themis Lazar...
JCC
2002
74views more  JCC 2002»
13 years 4 months ago
Determination of the effective dielectric constant from the accurate solution of the Poisson equation
: Constant dielectric (CD) and distance-dependent dielectric (DDD) functions are the most popular and widespread in the Molecular Mechanics simulations of large molecular systems. ...
Vladislav Vasilyev
KDD
2005
ACM
109views Data Mining» more  KDD 2005»
14 years 5 months ago
Formulating distance functions via the kernel trick
Tasks of data mining and information retrieval depend on a good distance function for measuring similarity between data instances. The most effective distance function must be for...
Gang Wu, Edward Y. Chang, Navneet Panda
MM
2005
ACM
134views Multimedia» more  MM 2005»
13 years 10 months ago
Formulating context-dependent similarity functions
Tasks of information retrieval depend on a good distance function for measuring similarity between data instances. The most effective distance function must be formulated in a con...
Gang Wu, Edward Y. Chang, Navneet Panda
BMCBI
2005
97views more  BMCBI 2005»
13 years 4 months ago
Evolutionary distance estimation and fidelity of pair wise sequence alignment
Background: Evolutionary distances are a critical measure in comparative genomics and molecular evolutionary biology. A simulation study was used to examine the effect of alignmen...
Michael S. Rosenberg