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BMCBI
2004
208views more  BMCBI 2004»
13 years 4 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
SIMPRA
2010
558views more  SIMPRA 2010»
13 years 3 months ago
Species abundance patterns in an ecosystem simulation studied through Fisher's logseries
We have developed an individual-based evolving predator-prey ecosystem simulation that integrates, for the first time, a complex individual behaviour model, an evolutionary mecha...
Didier Devaurs, Robin Gras
SIMULATION
2011
12 years 11 months ago
The Activity-tracking paradigm in discrete-event modeling and simulation: The case of spatially continuous distributed systems
From a modelling and simulation perspective, studying dynamic systems consists of focusing on changes in states. According to the precision of state changes, generic algorithms ca...
Alexandre Muzy, Rajanikanth Jammalamadaka, Bernard...
TMM
2002
104views more  TMM 2002»
13 years 4 months ago
Spatial contextual classification and prediction models for mining geospatial data
Modeling spatial context (e.g., autocorrelation) is a key challenge in classification problems that arise in geospatial domains. Markov random fields (MRF) is a popular model for i...
Shashi Shekhar, Paul R. Schrater, Ranga Raju Vatsa...
SPAA
2006
ACM
13 years 10 months ago
Modeling instruction placement on a spatial architecture
In response to current technology scaling trends, architects are developing a new style of processor, known as spatial computers. A spatial computer is composed of hundreds or eve...
Martha Mercaldi, Steven Swanson, Andrew Petersen, ...