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» Domain-based small molecule binding site annotation
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BMCBI
2010
121views more  BMCBI 2010»
13 years 5 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...
BMCBI
2006
103views more  BMCBI 2006»
13 years 5 months ago
Domain-based small molecule binding site annotation
Background: Accurate small molecule binding site information for a protein can facilitate studies in drug docking, drug discovery and function prediction, but small molecule bindi...
Kevin A. Snyder, Howard J. Feldman, Michel Dumonti...
BIB
2005
149views more  BIB 2005»
13 years 4 months ago
Biomolecular Interaction Network Database
The Biomolecular Interaction Network Database (BIND) (http://bind.ca) archives biomolecular interaction, reaction, complex and pathway information. Our aim is to curate the detail...
Don Gilbert
NAR
2011
199views Computer Vision» more  NAR 2011»
12 years 7 months ago
FragmentStore - a comprehensive database of fragments linking metabolites, toxic molecules and drugs
Consideration of biomolecules in terms of their molecular building blocks provides valuable new information regarding their synthesis, degradation and similarity. Here, we present...
Jessica Ahmed, Catherine L. Worth, Paul Florian Th...
JCAMD
2010
92views more  JCAMD 2010»
12 years 11 months ago
Ligand docking and binding site analysis with PyMOL and Autodock/Vina
Docking of small molecule compounds into the binding site of a receptor and estimating the binding affinity of the complex is an important part of the structurebased drug design pr...
Daniel Seeliger, Bert L. de Groot