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» Dynamic Algorithm Selection in Parallel GAMESS Calculations
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JCPHY
2011
192views more  JCPHY 2011»
12 years 8 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
IPPS
1996
IEEE
13 years 9 months ago
Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection
A common statistical problem is that of nding the median element in a set of data. This paper presents a fastand portable parallel algorithm for nding the median given a set of el...
David A. Bader, Joseph JáJá
CPHYSICS
2008
97views more  CPHYSICS 2008»
13 years 5 months ago
Parallel algorithms for molecular dynamics with induction forces
We examine parallel algorithms for molecular dynamics simulations involving long-range induction interactions. The algorithms are tested by performing molecular dynamics simulatio...
Jianhui Li, Zhongwu Zhou, Richard J. Sadus
IMCSIT
2010
13 years 4 days ago
Multi-level Parallelization with Parallel Computational Services in BeesyCluster
The paper presents a concept, implementation and real examples of dynamic parallelization of computations using services derived from MPI applications deployed in the BeesyCluster ...
Pawel Czarnul
CEC
2005
IEEE
13 years 7 months ago
A new approach to dynamics analysis of genetic algorithms without selection
Abstract- Theoretical analysis of the dynamics of evolutionary algorithms is believed to be very important to understand the search behavior of evolutionary algorithms and to devel...
Tatsuya Okabe, Yaochu Jin, Bernhard Sendhoff