22 search results - page 1 / 5 » Dynamic parallelization for RNA structure comparison |
IPPS
2009
IEEE
13 years 11 months ago
2009
IEEE
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
BMCBI
2006
13 years 4 months ago
2006
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
IPPS
2007
IEEE
13 years 11 months ago
2007
IEEE
Ribonucleic acid (RNA) molecules play important roles in many biological processes including gene expression and regulation. An RNA molecule is a linear polymer which folds back o...
ICPP
2006
IEEE
13 years 10 months ago
2006
IEEE
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
JCB
2002
13 years 4 months ago
2002
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...