22 search results - page 2 / 5 » Dynamic parallelization for RNA structure comparison |
ICASSP
2008
IEEE
13 years 11 months ago
2008
IEEE
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
BMCBI
2010
13 years 5 months ago
2010
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
JPDC
2010
13 years 1 days ago
2010
We show a method for parallelizing top down dynamic programs in a straightforward way by a careful choice of a lock-free shared hash table implementation and randomization of the ...
ISCAPDCS
2003
13 years 6 months ago
2003
This paper discusses the use of “relative debugging” as a technique for locating errors in a program that has been ported or developed using evolutionary software engineering ...
GCB
2009
Springer
13 years 11 months ago
2009
Springer
Abstract: The analysis of RNA folding landscapes yields insights into the kinetic folding behavior not available from classical structure prediction methods. This is especially imp...