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    BMCBI
    2008
    86views more  BMCBI 2008»
    Predicting protein linkages in bacteria: Which method is best depends on task
    13 years 5 months ago
    Predicting protein linkages in bacteria: Which method is best depends on task
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    Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
    Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 9 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
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    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    BMCBI
    2006
    143views more  BMCBI 2006»
    Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
    13 years 5 months ago
    Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
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    Background: Microarray technology produces gene expression data on a genomic scale for an endless variety of organisms and conditions. However, this vast amount of information nee...
    Rainer König, Gunnar Schramm, Marcus Oswald, ...
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    BMCBI
    2006
    145views more  BMCBI 2006»
    GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
    13 years 5 months ago
    GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
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    Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
    Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
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    BMCBI
    2007
    126views more  BMCBI 2007»
    Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation
    13 years 5 months ago
    Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation
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    Background: Biochemical investigations over the last decades have elucidated an increasingly complete image of the cellular metabolism. To derive a systems view for the regulation...
    Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer ...
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