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NAR
2011
222views Computer Vision» more  NAR 2011»
12 years 7 months ago
Effective - a database of predicted secreted bacterial proteins
Protein secretion is a key virulence mechanism of pathogenic and symbiotic bacteria, which makes the investigation of secreted proteins (‘effectors’) crucial for understanding...
Marc-André Jehl, Roland Arnold, Thomas Ratt...
BMCBI
2008
133views more  BMCBI 2008»
13 years 5 months ago
LocateP: Genome-scale subcellular-location predictor for bacterial proteins
Background: In the past decades, various protein subcellular-location (SCL) predictors have been developed. Most of these predictors, like TMHMM 2.0, SignalP 3.0, PrediSi and Phob...
Miaomiao Zhou, Jos Boekhorst, Christof Francke, Ro...
BMCBI
2010
127views more  BMCBI 2010»
13 years 5 months ago
Computational prediction of type III secreted proteins from gram-negative bacteria
Background: Type III secretion system (T3SS) is a specialized protein delivery system in gramnegative bacteria that injects proteins (called effectors) directly into the eukaryoti...
Yang Yang, Jiayuan Zhao, Robyn L. Morgan, Wenbo Ma...
BMCBI
2011
13 years 1 days ago
NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins
Background: Most predictive methods currently available for the identification of protein secretion mechanisms have focused on classically secreted proteins. In fact, only two met...
Daniel Restrepo-Montoya, Camilo Pino, Luis F. Ni&n...
BMCBI
2005
96views more  BMCBI 2005»
13 years 4 months ago
Evaluating eukaryotic secreted protein prediction
Background: Improvements in protein sequence annotation and an increase in the number of annotated protein databases has fueled development of an increasing number of software too...
Eric W. Klee, Lynda B. M. Ellis