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BMCBI
2008
228views more  BMCBI 2008»
13 years 5 months ago
Adaptive diffusion kernel learning from biological networks for protein function prediction
Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
Liang Sun, Shuiwang Ji, Jieping Ye
KDD
2008
ACM
181views Data Mining» more  KDD 2008»
14 years 5 months ago
Learning subspace kernels for classification
Kernel methods have been applied successfully in many data mining tasks. Subspace kernel learning was recently proposed to discover an effective low-dimensional subspace of a kern...
Jianhui Chen, Shuiwang Ji, Betul Ceran, Qi Li, Min...
VLSID
2002
IEEE
149views VLSI» more  VLSID 2002»
14 years 5 months ago
Functional Partitioning for Low Power Distributed Systems of Systems-on-a-Chip
In this paper, we present a functional partitioning method for low power real-time distributed embedded systems whose constituent nodes are systems-on-a-chip (SOCs). The systemlev...
Yunsi Fei, Niraj K. Jha
ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
13 years 3 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
BMCBI
2007
166views more  BMCBI 2007»
13 years 5 months ago
How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
Background: The search for enriched features has become widely used to characterize a set of genes or proteins. A key aspect of this technique is its ability to identify correlati...
Roland Barriot, David J. Sherman, Isabelle Dutour