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» Efficient Seeding Techniques for Protein Similarity Search
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BMCBI
2010
113views more  BMCBI 2010»
13 years 5 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
BMCBI
2006
120views more  BMCBI 2006»
13 years 5 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
BMCBI
2007
124views more  BMCBI 2007»
13 years 5 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
DKE
2008
91views more  DKE 2008»
13 years 5 months ago
SUSAX: Context-specific searching in XML documents using sequence alignment techniques
Keyword searching while very successful in narrowing down the contents of the Web to the pertaining subset of information, has two primary drawbacks. First, the accuracy of the se...
Kajal T. Claypool
BMCBI
2010
163views more  BMCBI 2010»
13 years 5 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek