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BMCBI
2011
12 years 8 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BMCBI
2010
157views more  BMCBI 2010»
13 years 4 months ago
SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
Background: High-throughput automated sequencing has enabled an exponential growth rate of sequencing data. This requires increasing sequence quality and reliability in order to a...
Juan Falgueras, Antonio J. Lara, Noé Fern&a...
BMCBI
2011
12 years 8 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
EDBT
2009
ACM
149views Database» more  EDBT 2009»
13 years 2 months ago
Towards integrated and efficient scientific sensor data processing: a database approach
In this work, we focus on managing scientific environmental data, which are measurement readings collected from wireless sensors. In environmental science applications, raw sensor...
Ji Wu, Yongluan Zhou, Karl Aberer, Kian-Lee Tan
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 2 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...