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PADL
2009
Springer
14 years 5 months ago
Using Bloom Filters for Large Scale Gene Sequence Analysis in Haskell
Analysis of biological data often involves large data sets and computationally expensive algorithms. Databases of biological data continue to grow, leading to an increasing demand ...
Ketil Malde, Bryan O'Sullivan
BMCBI
2007
177views more  BMCBI 2007»
13 years 5 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
SSD
2001
Springer
162views Database» more  SSD 2001»
13 years 9 months ago
Interval Sequences: An Object-Relational Approach to Manage Spatial Data
The design of external index structures for one- and multidimensional extended objects is a long and well studied subject in basic database research. Today, more and more commercia...
Hans-Peter Kriegel, Marco Pötke, Thomas Seidl
CIKM
2009
Springer
13 years 9 months ago
Scalable indexing of RDF graphs for efficient join processing
Current approaches to RDF graph indexing suffer from weak data locality, i.e., information regarding a piece of data appears in multiple locations, spanning multiple data structur...
George H. L. Fletcher, Peter W. Beck
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 5 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving