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» Efficient drawing of RNA secondary structure
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JGAA
2006
69views more  JGAA 2006»
13 years 5 months ago
Efficient drawing of RNA secondary structure
In this paper, we propose a new layout algorithm that draws the secondary structure of a Ribonucleic Acid (RNA) automatically according to some of the biologists' aesthetic c...
David Auber, Maylis Delest, Jean-Philippe Domenger...
BMCBI
2011
13 years 9 days ago
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
Background: With continuing identification of novel structured noncoding RNAs, there is an increasing need to create schematic diagrams showing the consensus features of these mol...
Zasha Weinberg, Ronald R. Breaker
BMCBI
2005
306views more  BMCBI 2005»
13 years 5 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
BIOINFORMATICS
2006
130views more  BIOINFORMATICS 2006»
13 years 5 months ago
Memory efficient folding algorithms for circular RNA secondary structures
A small class of RNA molecules, in particular the tiny genomes of viroids, are circular. Yet most structure prediction algorithms handle only linear RNAs. The most straightforward ...
Ivo L. Hofacker, Peter F. Stadler
IV
2006
IEEE
108views Visualization» more  IV 2006»
13 years 11 months ago
From Visualization to Manipulation of RNA Secondary and Tertiary Structures
Ribonucleic Acid (RNA) is an important molecule which performs a wide range of functions in biological systems. We present a method for visualizing, exploring and editing RNA mole...
Gilles Bailly, David Auber, Laurence Nigay