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» Enhanced protein domain discovery using taxonomy
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BMCBI
2007
127views more  BMCBI 2007»
13 years 6 months ago
The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments
Background: Isotope-coded affinity tags (ICAT) is a method for quantitative proteomics based on differential isotopic labeling, sample digestion and mass spectrometry (MS). The me...
Mario Cannataro, Giovanni Cuda, Marco Gaspari, Ser...
BMCBI
2005
149views more  BMCBI 2005»
13 years 5 months ago
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
Jan Kosinski, Marcin Feder, Janusz M. Bujnicki
BMCBI
2005
119views more  BMCBI 2005»
13 years 5 months ago
A protein domain interaction interface database: InterPare
Background: Most proteins function by interacting with other molecules. Their interaction interfaces are highly conserved throughout evolution to avoid undesirable interactions th...
Sungsam Gong, Changbum Park, Hansol Choi, Junsu Ko...
CN
2008
81views more  CN 2008»
13 years 6 months ago
A survey on resource discovery mechanisms, peer-to-peer and service discovery frameworks
Service and resource discovery has become an integral part of modern networked systems. In this survey we give an overview of the existing solutions for service and resource discov...
Elena Meshkova, Janne Riihijärvi, Marina Petr...
BMCBI
2008
153views more  BMCBI 2008»
13 years 6 months ago
Improved general regression network for protein domain boundary prediction
Background: Protein domains present some of the most useful information that can be used to understand protein structure and functions. Recent research on protein domain boundary ...
Paul D. Yoo, Abdur R. Sikder, Bing Bing Zhou, Albe...