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IDA
2009
Springer
13 years 2 months ago
Estimating Hidden Influences in Metabolic and Gene Regulatory Networks
We address the applicability of blind source separation (BSS) methods for the estimation of hidden influences in biological dynamic systems such as metabolic or gene regulatory net...
Florian Blöchl, Fabian J. Theis
BMCBI
2008
129views more  BMCBI 2008»
13 years 5 months ago
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments
Background: Metabolic fluxes provide invaluable insight on the integrated response of a cell to environmental stimuli or genetic modifications. Current computational methods for e...
Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Za...
CMPB
2010
171views more  CMPB 2010»
13 years 1 days ago
Metabolica: A statistical research tool for analyzing metabolic networks
Steady state flux balance analysis (FBA) for cellular metabolism is used, e.g., to seek information on the activity of the different pathways under equilibrium conditions, or as a...
Jenni Heino, Daniela Calvetti, Erkki Somersalo
CEC
2010
IEEE
13 years 1 days ago
Parameter estimation with term-wise decomposition in biochemical network GMA models by hybrid regularized Least Squares-Particle
High-throughput analytical techniques such as nuclear magnetic resonance, protein kinase phosphorylation, and mass spectroscopic methods generate time dense profiles of metabolites...
Prospero C. Naval, Luis G. Sison, Eduardo R. Mendo...
EUROPAR
2009
Springer
13 years 9 months ago
A Buffer Space Optimal Solution for Re-establishing the Packet Order in a MPSoC Network Processor
We consider a multi-processor system-on-chip destined for streaming applications. An application is composed of one input and one output queue and in-between, several levels of ide...
Daniela Genius, Alix Munier Kordon, Khouloud Zine ...