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» Evaluating Between-Pathway Models with Expression Data
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BMCBI
2002
188views more  BMCBI 2002»
13 years 5 months ago
The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data
Background: The biomedical community is developing new methods of data analysis to more efficiently process the massive data sets produced by microarray experiments. Systematic an...
David M. Mutch, Alvin Berger, Robert Mansourian, A...
BMCBI
2004
158views more  BMCBI 2004»
13 years 5 months ago
A novel Mixture Model Method for identification of differentially expressed genes from DNA microarray data
Background: The main goal in analyzing microarray data is to determine the genes that are differentially expressed across two types of tissue samples or samples obtained under two...
Kayvan Najarian, Maryam Zaheri, Ali Ajdari Rad, Si...
CIDR
2003
123views Algorithms» more  CIDR 2003»
13 years 7 months ago
Managing Expressions as Data in Relational Database Systems
A wide-range of applications, including Publish/Subscribe, Workflow, and Web-site Personalization, require maintaining user’s interest in expected data as conditional expression...
Aravind Yalamanchi, Jagannathan Srinivasan, Dieter...
ISAAC
2007
Springer
135views Algorithms» more  ISAAC 2007»
13 years 11 months ago
Fast Evaluation of Union-Intersection Expressions
Abstract. We show how to represent sets in a linear space data structure such that expressions involving unions and intersections of sets can be computed in a worst-case efficient ...
Philip Bille, Anna Pagh, Rasmus Pagh
BMCBI
2007
147views more  BMCBI 2007»
13 years 5 months ago
Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model
Background: Serial analysis of gene expression (SAGE) is used to obtain quantitative snapshots of the transcriptome. These profiles are count-based and are assumed to follow a Bin...
Scott D. Zuyderduyn