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» Evaluating Parallel Computing Systems in Bioinformatics
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EUROPAR
2004
Springer
13 years 10 months ago
A Generic Parallel Pattern-Based System for Bioinformatics
Abstract. Parallel program design patterns provide users a new way to get parallel programs without much effort. However, it is always a serious limitation for most existing parall...
Weiguo Liu, Bertil Schmidt
CIKM
2009
Springer
13 years 11 months ago
SPIDER: a system for scalable, parallel / distributed evaluation of large-scale RDF data
RDF is a data model for representing labeled directed graphs, and it is used as an important building block of semantic web. Due to its flexibility and applicability, RDF has bee...
Hyunsik Choi, Jihoon Son, YongHyun Cho, Min Kyoung...
ESCIENCE
2006
IEEE
13 years 10 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...
HPDC
2010
IEEE
13 years 5 months ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
PROCEDIA
2010
138views more  PROCEDIA 2010»
12 years 11 months ago
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially i...
Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Car...