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PSB
2007
13 years 6 months ago
Evaluating the Automatic Mapping of Human Gene and Protein Mentions to Unique Identifiers
bstract. We are distributing 281 annotated abstracts and another 5,000 noisily d abstracts along with a gene name lexicon to participants. We have performed a series of baseline ex...
Alexander A. Morgan, Benjamin Wellner, Jeffrey B. ...
BMCBI
2005
125views more  BMCBI 2005»
13 years 5 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
CICLING
2007
Springer
13 years 9 months ago
Rule-Based Protein Term Identification with Help from Automatic Species Tagging
In biomedical articles, terms often refer to different protein entities. For example, an arbitrary occurrence of term p53 might denote thousands of proteins across a number of spec...
Xinglong Wang
BMCBI
2007
181views more  BMCBI 2007»
13 years 5 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
BMCBI
2004
130views more  BMCBI 2004»
13 years 5 months ago
PATTERNFINDER: combined analysis of DNA regulatory sequences and double-helix stability
Background: Regulatory regions that function in DNA replication and gene transcription contain specific sequences that bind proteins as well as less-specific sequences in which th...
Yanlin Huang, David Kowalski