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ICPPW
2009
IEEE
13 years 2 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
ASPLOS
2011
ACM
12 years 8 months ago
DoublePlay: parallelizing sequential logging and replay
Deterministic replay systems record and reproduce the execution of a hardware or software system. In contrast to replaying execution on uniprocessors, deterministic replay on mult...
Kaushik Veeraraghavan, Dongyoon Lee, Benjamin West...
ASPLOS
2009
ACM
14 years 5 months ago
Dynamic prediction of collection yield for managed runtimes
The growth in complexity of modern systems makes it increasingly difficult to extract high-performance. The software stacks for such systems typically consist of multiple layers a...
Michal Wegiel, Chandra Krintz
SYSTOR
2009
ACM
13 years 11 months ago
DHIS: discriminating hierarchical storage
A typical storage hierarchy comprises of components with varying performance and cost characteristics, providing multiple options for data placement. We propose and evaluate a hie...
Chaitanya Yalamanchili, Kiron Vijayasankar, Erez Z...
IPPS
2002
IEEE
13 years 9 months ago
Can User-Level Protocols Take Advantage of Multi-CPU NICs?
Modern high speed interconnects such as Myrinet and Gigabit Ethernet have shifted the bottleneck in communication from the interconnect to the messaging software at the sending an...
Piyush Shivam, Pete Wyckoff, Dhabaleswar K. Panda