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» Evaluation of microarray data normalization procedures using...
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BMCBI
2006
131views more  BMCBI 2006»
13 years 4 months ago
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
Background: Microarrays measure the binding of nucleotide sequences to a set of sequence specific probes. This information is combined with annotation specifying the relationship ...
Michal J. Okoniewski, Crispin J. Miller
IMSCCS
2006
IEEE
13 years 10 months ago
Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microcarray Data
Multicategory Support Vector Machines (MC-SVM) are powerful classification systems with excellent performance in a variety of biological classification problems. However, the proc...
Chaoyang Zhang, Peng Li, Arun Rajendran, Youping D...
BMCBI
2007
148views more  BMCBI 2007»
13 years 4 months ago
Computation of significance scores of unweighted Gene Set Enrichment Analyses
Background: Gene Set Enrichment Analysis (GSEA) is a computational method for the statistical evaluation of sorted lists of genes or proteins. Originally GSEA was developed for in...
Andreas Keller, Christina Backes, Hans-Peter Lenho...
BMCBI
2010
111views more  BMCBI 2010»
13 years 4 months ago
Functional Analysis: Evaluation of Response Intensities - Tailoring ANOVA for Lists of Expression Subsets
Background: Microarray data is frequently used to characterize the expression profile of a whole genome and to compare the characteristics of that genome under several conditions....
Fabrice Berger, Bertrand De Meulder, Anthoula Gaig...
BMCBI
2004
146views more  BMCBI 2004»
13 years 4 months ago
Multivariate search for differentially expressed gene combinations
Background: To identify differentially expressed genes, it is standard practice to test a twosample hypothesis for each gene with a proper adjustment for multiple testing. Such te...
Yuanhui Xiao, Robert D. Frisina, Alexander Gordon,...