Sciweavers

Share
7 search results - page 1 / 2
» Evaluation of short read metagenomic assembly
Sort
View
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
10 years 9 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala
BMCBI
2010
127views more  BMCBI 2010»
10 years 12 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
EVOW
2009
Springer
11 years 6 months ago
Clustering Metagenome Short Reads Using Weighted Proteins
Abstract. This paper proposes a new knowledge-based method for clustering metagenome short reads. The method incorporates biological knowledge in the clustering process, by means o...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
BMCBI
2008
220views more  BMCBI 2008»
10 years 12 months ago
Gene prediction in metagenomic fragments: A large scale machine learning approach
Background: Metagenomics is an approach to the characterization of microbial genomes via the direct isolation of genomic sequences from the environment without prior cultivation. ...
Katharina J. Hoff, Maike Tech, Thomas Lingner, Rol...
BMCBI
2011
10 years 6 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
books