The significant and meaningful fraction of all the potential information residing in the molecules and structures of living systems is unknown. Sets of random molecular sequences o...
David J. Galas, Matti Nykter, Gregory W. Carter, N...
In this paper, we propose a unified algorithmic framework for solving many known variants of MDS. Our algorithm is a simple iterative scheme with guaranteed convergence, and is m...
Arvind Agarwal, Jeff M. Phillips, Suresh Venkatasu...
Background: Computational prediction methods are currently used to identify genes in prokaryote genomes. However, identification of the correct translation initiation sites remain...
Yuko Makita, Michiel J. L. de Hoon, Antoine Danchi...
Semi-supervised clustering algorithms aim to improve clustering results using limited supervision. The supervision is generally given as pairwise constraints; such constraints are...
Brian Kulis, Sugato Basu, Inderjit S. Dhillon, Ray...
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...