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TIT
2010
122views Education» more  TIT 2010»
12 years 11 months ago
Biological information as set-based complexity
The significant and meaningful fraction of all the potential information residing in the molecules and structures of living systems is unknown. Sets of random molecular sequences o...
David J. Galas, Matti Nykter, Gregory W. Carter, N...
KDD
2010
ACM
195views Data Mining» more  KDD 2010»
13 years 8 months ago
Universal multi-dimensional scaling
In this paper, we propose a unified algorithmic framework for solving many known variants of MDS. Our algorithm is a simple iterative scheme with guaranteed convergence, and is m...
Arvind Agarwal, Jeff M. Phillips, Suresh Venkatasu...
BMCBI
2007
147views more  BMCBI 2007»
13 years 4 months ago
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
Background: Computational prediction methods are currently used to identify genes in prokaryote genomes. However, identification of the correct translation initiation sites remain...
Yuko Makita, Michiel J. L. de Hoon, Antoine Danchi...
ICML
2005
IEEE
14 years 5 months ago
Semi-supervised graph clustering: a kernel approach
Semi-supervised clustering algorithms aim to improve clustering results using limited supervision. The supervision is generally given as pairwise constraints; such constraints are...
Brian Kulis, Sugato Basu, Inderjit S. Dhillon, Ray...
ALMOB
2006
155views more  ALMOB 2006»
13 years 4 months ago
Refining motifs by improving information content scores using neighborhood profile search
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...