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CF
2008
ACM
13 years 7 months ago
DMA-based prefetching for i/o-intensive workloads on the cell architecture
Recent advent of the asymmetric multi-core processors such as Cell Broadband Engine (Cell/BE) has popularized the use of heterogeneous architectures. A growing body of research is...
M. Mustafa Rafique, Ali Raza Butt, Dimitrios S. Ni...
ICCD
2008
IEEE
159views Hardware» more  ICCD 2008»
14 years 1 months ago
Optimizing data sharing and address translation for the Cell BE Heterogeneous Chip Multiprocessor
— Heterogeneous Chip Multiprocessors (HMPs), such as the Cell Broadband Engine, offer a new design optimization opportunity by allowing designers to provide accelerators for appl...
Michael Gschwind
TC
2010
13 years 3 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BMCBI
2008
106views more  BMCBI 2008»
13 years 5 months ago
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Background: Bio-ontologies are key elements of knowledge management in bioinformatics. Rich and rigorous bio-ontologies should represent biological knowledge with high fidelity an...
Mikel Egaña Aranguren, Erick Antezana, Mart...
BMCBI
2010
218views more  BMCBI 2010»
13 years 5 months ago
Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets
Background: Solving bioinformatics tasks often requires extensive computational power. Recent trends in processor architecture combine multiple cores into a single chip to improve...
Michael Scharfe, Rainer Pielot, Falk Schreiber