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BMCBI
2005
73views more  BMCBI 2005»
13 years 4 months ago
Exploring the boundaries: gene and protein identification in biomedical text
We present a maximum-entropy based system incorporating a diverse set of features for identifying genes and proteins in biomedical s. This system was entered in the BioCreative co...
Jenny Rose Finkel, Shipra Dingare, Christopher D. ...
BMCBI
2005
151views more  BMCBI 2005»
13 years 4 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
BMCBI
2008
173views more  BMCBI 2008»
13 years 4 months ago
Extraction of semantic biomedical relations from text using conditional random fields
Background: The increasing amount of published literature in biomedicine represents an immense source of knowledge, which can only efficiently be accessed by a new generation of a...
Markus Bundschus, Mathäus Dejori, Martin Stet...
BMCBI
2005
189views more  BMCBI 2005»
13 years 4 months ago
A sentence sliding window approach to extract protein annotations from biomedical articles
Background: Within the emerging field of text mining and statistical natural language processing (NLP) applied to biomedical articles, a broad variety of techniques have been deve...
Martin Krallinger, Maria Padron, Alfonso Valencia
BMCBI
2005
125views more  BMCBI 2005»
13 years 4 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...