10 search results - page 1 / 2 » FANGS: high speed sequence mapping for next generation seque... |
SAC
2010
ACM
13 years 4 months ago
2010
ACM
Next Generation Sequencing machines are generating millions of short DNA sequences (reads) everyday. There is a need for efficient algorithms to map these sequences to the referen...
IPPS
2010
IEEE
13 years 2 months ago
2010
IEEE
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
BIBE
2008
IEEE
13 years 11 months ago
2008
IEEE
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
IPPS
2010
IEEE
13 years 2 months ago
2010
IEEE
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
TII
2008
13 years 4 months ago
2008
This paper presents a novel modeling analysis of jitter as applicable to testing of serial data channels. Jitter is analyzed by considering separate and combined components. The pr...