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BMCBI
2010
109views more  BMCBI 2010»
13 years 4 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
IPPS
2009
IEEE
13 years 11 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
SAC
2010
ACM
12 years 11 months ago
Probabilistic relabelling strategies for the label switching problem in Bayesian mixture models
The label switching problem is caused by the likelihood of a Bayesian mixture model being invariant to permutations of the labels. The permutation can change multiple times betwee...
M. Sperrin, Thomas Jaki, E. Wit