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» Factored A* Search for Models over Sequences and Trees
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DOCENG
2004
ACM
13 years 10 months ago
Presenting the results of relevance-oriented search over XML documents
In this paper, we discuss how to present the result of searching elements of any type from XML documents relevant to some information need (relevance-oriented search). As the resu...
Alda Lopes Gançarski, Pedro Rangel Henrique...
NAR
2008
103views more  NAR 2008»
13 years 4 months ago
DBD--taxonomically broad transcription factor predictions: new content and functionality
DNA-binding domain (DBD) is a database of predicted sequence-specific DNA-binding transcription factors (TFs) for all publicly available proteomes. The proteomes have increased fr...
Derek Wilson, Varodom Charoensawan, Sarah K. Kumme...
BMCBI
2011
12 years 12 months ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
CP
2008
Springer
13 years 6 months ago
Flow-Based Propagators for the SEQUENCE and Related Global Constraints
We propose new filtering algorithms for the SEQUENCE constraint and some extensions of the SEQUENCE constraint based on network flows. We enforce domain consistency on the SEQUENCE...
Michael J. Maher, Nina Narodytska, Claude-Guy Quim...