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ISAAC
2005
Springer
113views Algorithms» more  ISAAC 2005»
13 years 10 months ago
Fast Algorithms for Computing the Tripartition-Based Distance Between Phylogenetic Networks
Consider two phylogenetic networks N and N′ of size n. The tripartition-based distance finds the proportion of tripartitions which are not shared by N and N′ . This distance i...
Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung
CORR
2007
Springer
165views Education» more  CORR 2007»
13 years 5 months ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...
CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
13 years 8 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan
BMCBI
2008
111views more  BMCBI 2008»
13 years 5 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2007
138views more  BMCBI 2007»
13 years 5 months ago
Fast computation of distance estimators
Background: Some distance methods are among the most commonly used methods for reconstructing phylogenetic trees from sequence data. The input to a distance method is a distance m...
Isaac Elias, Jens Lagergren