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CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
13 years 9 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
SPIRE
2005
Springer
13 years 10 months ago
Restricted Transposition Invariant Approximate String Matching Under Edit Distance
Let A and B be strings with lengths m and n, respectively, over a finite integer alphabet. Two classic string mathing problems are computing the edit distance between A and B, and...
Heikki Hyyrö
IWOCA
2009
Springer
132views Algorithms» more  IWOCA 2009»
13 years 11 months ago
Fast Convolutions and Their Applications in Approximate String Matching
We develop a method for performing boolean convolutions efficiently in word RAM model of computation, having a word size of w = Ω(log n) bits, where n is the input size. The tech...
Kimmo Fredriksson, Szymon Grabowski
CPM
2005
Springer
206views Combinatorics» more  CPM 2005»
13 years 10 months ago
A Fast Algorithm for Approximate String Matching on Gene Sequences
Abstract. Approximate string matching is a fundamental and challenging problem in computer science, for which a fast algorithm is highly demanded in many applications including tex...
Zheng Liu, Xin Chen, James Borneman, Tao Jiang