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WEA
2004
Springer
150views Algorithms» more  WEA 2004»
13 years 11 months ago
Increased Bit-Parallelism for Approximate String Matching
Abstract. Bit-parallelism permits executing several operations simultaneously over a set of bits or numbers stored in a single computer word. This technique permits searching for t...
Heikki Hyyrö, Kimmo Fredriksson, Gonzalo Nava...
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
13 years 10 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
ICALP
2005
Springer
13 years 11 months ago
Randomized Fast Design of Short DNA Words
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivati...
Ming-Yang Kao, Manan Sanghi, Robert T. Schweller
CPM
2010
Springer
175views Combinatorics» more  CPM 2010»
13 years 11 months ago
Compression, Indexing, and Retrieval for Massive String Data
The field of compressed data structures seeks to achieve fast search time, but using a compressed representation, ideally requiring less space than that occupied by the original i...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter
SIGIR
1998
ACM
13 years 10 months ago
Fast Searching on Compressed Text Allowing Errors
Abstract We present a fast compression and decompression scheme for natural language texts that allows e cient and exible string matching by searching the compressed text directly....
Edleno Silva de Moura, Gonzalo Navarro, Nivio Zivi...