522 search results - page 1 / 105 » Fast Smith-Waterman hardware implementation |
IPPS
2010
IEEE
13 years 2 months ago
2010
IEEE
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
BMCBI
2011
12 years 8 months ago
2011
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
BMCBI
2008
13 years 4 months ago
2008
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
SASP
2009
IEEE
13 years 11 months ago
2009
IEEE
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
FPL
2003
Springer
13 years 9 months ago
2003
Springer
With an aim to understand the information encoded by DNA sequences, databases containing large amount of DNA sequence information are frequently compared and searched for matching ...