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» Faster suffix tree construction with missing suffix links
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STOC
2000
ACM
117views Algorithms» more  STOC 2000»
13 years 9 months ago
Faster suffix tree construction with missing suffix links
Abstract. We consider suffix tree construction for situations with missing suffix links. Two examples of such situations are suffix trees for parameterized strings and suffix trees...
Richard Cole, Ramesh Hariharan
TCS
2008
13 years 5 months ago
On-line construction of compact suffix vectors and maximal repeats
A suffix vector of a string is an index data structure equivalent to a suffix tree. It was first introduced by Monostori et al. in 2001 [9, 10, 11]. They proposed a linear constru...
Élise Prieur, Thierry Lecroq
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 5 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
13 years 8 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya