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» Finding Motifs with Gaps
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EVOW
2010
Springer
13 years 3 months ago
Finding Gapped Motifs by a Novel Evolutionary Algorithm
Background: Identifying approximately repeated patterns, or motifs, in DNA sequences from a set of co-regulated genes is an important step towards deciphering the complex gene reg...
Chengwei Lei, Jianhua Ruan
ISAAC
2004
Springer
125views Algorithms» more  ISAAC 2004»
13 years 10 months ago
Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs
RNA molecules whose secondary structures contain similar substructures often have similar functions. Therefore, an important task in the study of RNA is to develop methods for disc...
Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung
ISMIR
2000
Springer
108views Music» more  ISMIR 2000»
13 years 8 months ago
Finding Motifs with Gaps
Maxime Crochemore, Costas S. Iliopoulos, Yoan J. P...
STRINGOLOGY
2004
13 years 6 months ago
A First Approach to Finding Common Motifs With Gaps
Costas S. Iliopoulos, James A. M. McHugh, Pierre P...
MFCS
2007
Springer
13 years 11 months ago
Structural Analysis of Gapped Motifs of a String
Abstract. We investigate the structure of the set of gapped motifs (repeated patterns with don’t cares) of a given string of symbols. A natural equivalence classification is int...
Esko Ukkonen