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» Finding Patterns with Variable Length Gaps or Don't Cares
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COCOON
2006
Springer
13 years 8 months ago
Finding Patterns with Variable Length Gaps or Don't Cares
In this paper we have presented new algorithms to handle the pattern matching problem where the pattern can contain variable length gaps. Given a pattern P with variable length gap...
M. Sohel Rahman, Costas S. Iliopoulos, Inbok Lee, ...
CIKM
2004
Springer
13 years 10 months ago
Scalable sequential pattern mining for biological sequences
Biosequences typically have a small alphabet, a long length, and patterns containing gaps (i.e., “don’t care”) of arbitrary size. Mining frequent patterns in such sequences ...
Ke Wang, Yabo Xu, Jeffrey Xu Yu
BMCBI
2004
146views more  BMCBI 2004»
13 years 4 months ago
The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence
Background: The program InDeVal was originally developed to help researchers find known regions of insertion/deletion activity (with the exception of isolated single-base indels) ...
Sierra D. Stoneberg Holt, Jason A. Holt