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» Finding Similar Regions in Many Sequences
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BMCBI
2005
130views more  BMCBI 2005»
13 years 5 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
SCALESPACE
2001
Springer
13 years 10 months ago
Morphological Tools for Robust Key-Region Extraction and Video Shot Modeling
Abstract. In recent years, the use of multimedia content has experienced an exponential growth. In this context, the need of new image/video sequence representation is becoming a n...
Javier Ruiz Hidalgo, Philippe Salembier
BMCBI
2008
71views more  BMCBI 2008»
13 years 5 months ago
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins
Background: It has been previously shown that palindromic sequences are frequently observed in proteins. However, our knowledge about their evolutionary origin and their possible ...
Armita Sheari, Mehdi Kargar, Ali Katanforoush, Sha...
JCB
2007
108views more  JCB 2007»
13 years 5 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
BMCBI
2005
138views more  BMCBI 2005»
13 years 5 months ago
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
Background: The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine ali...
Kshitiz Gupta, Dina Thomas, S. V. Vidya, K. V. Ven...