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» Finding Transport Proteins in a General Protein Database
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PKDD
2007
Springer
76views Data Mining» more  PKDD 2007»
13 years 11 months ago
Finding Transport Proteins in a General Protein Database
The number of specialized databases in molecular biology is growing fast, as is the availability of molecular data. These trends necessitate the development of automatic methods fo...
Sanmay Das, Milton H. Saier Jr., Charles Elkan
BMCBI
2004
125views more  BMCBI 2004»
13 years 4 months ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...
AUSAI
2008
Springer
13 years 6 months ago
Learning to Find Relevant Biological Articles without Negative Training Examples
Classifiers are traditionally learned using sets of positive and negative training examples. However, often a classifier is required, but for training only an incomplete set of pos...
Keith Noto, Milton H. Saier Jr., Charles Elkan
BMCBI
2006
109views more  BMCBI 2006»
13 years 4 months ago
A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions
Background: Phytochromes are photoreceptors, discovered in plants, that control a wide variety of developmental processes. They have also been found in bacteria and fungi, but for...
Tilman Lamparter
NAR
1998
102views more  NAR 1998»
13 years 4 months ago
The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae
The Yeast Protein Database (YPD) is a curated database for the proteome of Saccharomyces cerevisiae. It consists of ∼6000 Yeast Protein Reports, one for each of the known or pre...
Peter E. Hodges, William E. Payne, James I. Garrel...