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» Finding Transport Proteins in a General Protein Database
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BMCBI
2010
121views more  BMCBI 2010»
13 years 2 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
GIS
2008
ACM
14 years 6 months ago
Should SDBMS support a join index?: a case study from CrimeStat
Given a spatial crime data warehouse, that is updated infrequently and a set of operations O as well as constraints of storage and update overheads, the index type selection probl...
Pradeep Mohan, Ronald E. Wilson, Shashi Shekhar, B...
BMCBI
2007
113views more  BMCBI 2007»
13 years 5 months ago
miRAS: a data processing system for miRNA expression profiling study
Background: The study of microRNAs (miRNAs) is attracting great considerations. Recent studies revealed that miRNAs play as important regulators of gene expression and some even a...
Feng Tian, Huayue Zhang, Xinyu Zhang, Chi Song, Yo...
BMCBI
2007
144views more  BMCBI 2007»
13 years 5 months ago
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic ge
Background: Although many genomic features have been used in the prediction of proteinprotein interactions (PPIs), frequently only one is used in a computational method. After rea...
Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan ...