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BMCBI
2007
166views more  BMCBI 2007»
13 years 5 months ago
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Background: In proteomic analysis, MS/MS spectra acquired by mass spectrometer are assigned to peptides by database searching algorithms such as SEQUEST. The assignations of pepti...
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingl...
BMCBI
2005
201views more  BMCBI 2005»
13 years 5 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
GECCO
2006
Springer
132views Optimization» more  GECCO 2006»
13 years 9 months ago
The role of diverse populations in phylogenetic analysis
The most popular approaches for reconstructing phylogenetic trees attempt to solve NP-hard optimization criteria such as maximum parsimony (MP). Currently, the bestperforming heur...
Tiffani L. Williams, Marc L. Smith
HPDC
2006
IEEE
13 years 11 months ago
Scheduling Mixed Workloads in Multi-grids: The Grid Execution Hierarchy
Consider a workload in which massively parallel tasks that require large resource pools are interleaved with short tasks that require fast response but consume fewer resources. We...
Mark Silberstein, Dan Geiger, Assaf Schuster, Miro...
SOCO
2010
Springer
13 years 9 days ago
Taximeter verification with GPS and soft computing techniques
Until recently, local governments in Spain were using machines with rolling cylinders for verifying taximeters. However, the condition of the tires can lead to errors in the proces...
José Villar, Adolfo Otero, José Oter...