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» GASSST: global alignment short sequence search tool
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BIOINFORMATICS
2010
91views more  BIOINFORMATICS 2010»
13 years 5 months ago
GASSST: global alignment short sequence search tool
Guillaume Rizk, Dominique Lavenier
IPPS
2003
IEEE
13 years 10 months ago
Using Hybrid Alignment for Iterative Sequence Database Searches
Progressive sequence model refinement by means of iterative searches is an effective technique for high sensitivity database searches and is currently employed in popular tools s...
Yuheng Li, Mario Lauria, Ralf Bundschuh
BMCBI
2008
123views more  BMCBI 2008»
13 years 5 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
AAAI
2000
13 years 6 months ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang
LATA
2010
Springer
13 years 10 months ago
A Randomized Numerical Aligner (rNA)
With the advent of new sequencing technologies able to produce an enormous quantity of short genomic sequences, new tools able to search for them inside a references sequence genom...
Alberto Policriti, Alexandru I. Tomescu, Francesco...