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» Gene Ontology annotations at SGD: new data sources and annot...
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NAR
2008
74views more  NAR 2008»
13 years 4 months ago
Gene Ontology annotations at SGD: new data sources and annotation methods
The Saccharomyces Genome Database (SGD; http:// www.yeastgenome.org/) collects and organizes biological information about the chromosomal features and gene products of the budding...
Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen...
CBMS
2008
IEEE
13 years 10 months ago
A New Path Length Measure Based on GO for Gene Similarity with Evaluation using SGD Pathways
We propose a new method for measuring the semantic similarity of genes based on path length between their annotation terms in the Gene Ontology. Our method applies an exponential ...
Anurag Nagar, Hisham Al-Mubaid
BIBE
2010
IEEE
148views Bioinformatics» more  BIBE 2010»
12 years 11 months ago
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering
We propose an algorithm that predicts potentially missing Gene Ontology annotations, in order to speed up the time-consuming annotation curation process. The proposed method extend...
Marco Tagliasacchi, Roberto Sarati, Marco Masserol...
BIBE
2009
IEEE
185views Bioinformatics» more  BIBE 2009»
13 years 9 months ago
Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks
Gene and protein structural and functional annotations expressed through controlled terminologies and ontologies are paramount especially for the aim of inferring new biomedical k...
Marco Tagliasacchi, Marco Masseroli
BMCBI
2010
139views more  BMCBI 2010»
13 years 4 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...