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    BMCBI
    2007
    80views more  BMCBI 2007»
    A network perspective on the topological importance of enzymes and their phylogenetic conservation
    13 years 5 months ago
    A network perspective on the topological importance of enzymes and their phylogenetic conservation
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    Background: A metabolic network is the sum of all chemical transformations or reactions in the cell, with the metabolites being interconnected by enzyme-catalyzed reactions. Many ...
    Wei-chung Liu, Wen-hsien Lin, Andrew J. Davis, Fer...
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    BMCBI
    2007
    154views more  BMCBI 2007»
    h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
    13 years 5 months ago
    h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
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    Background: An ever increasing number of techniques are being used to find genes with similar profiles from microarray studies. Visualization of gene expression profiles can aid t...
    Yvonne E. Pittelkow, Susan R. Wilson
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    BMCBI
    2007
    148views more  BMCBI 2007»
    BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
    13 years 5 months ago
    BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
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    Background: Overlapping genes (OGs) in bacterial genomes are pairs of adjacent genes of which the coding sequences overlap partly or entirely. With the rapid accumulation of seque...
    Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin
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    BMCBI
    2002
    126views more  BMCBI 2002»
    RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
    13 years 5 months ago
    RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
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    Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
    Christian M. Zmasek, Sean R. Eddy
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    ACSC
    2009
    IEEE
    204views Theoretical Computer Science» more  ACSC 2009»
    Inference of Gene Expression Networks Using Memetic Gene Expression Programming
    14 years 2 days ago
    Inference of Gene Expression Networks Using Memetic Gene Expression Programming
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    In this paper we aim to infer a model of genetic networks from time series data of gene expression profiles by using a new gene expression programming algorithm. Gene expression n...
    Armita Zarnegar, Peter Vamplew, Andrew Stranieri
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