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» Gene finding in novel genomes
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BMCBI
2004
96views more  BMCBI 2004»
13 years 4 months ago
Gene finding in novel genomes
Background: Computational gene prediction continues to be an important problem, especially for genomes with little experimental data. Results: I introduce the SNAP gene finder whi...
Ian Korf
JCB
2006
129views more  JCB 2006»
13 years 4 months ago
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
Genome-wide microarray designs containing millions to hundreds of millions of probes are available for a variety of mammals, including mouse and human. These genome tiling arrays ...
Brendan J. Frey, Quaid Morris, Timothy R. Hughes
BMCBI
2006
145views more  BMCBI 2006»
13 years 4 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
BMCBI
2005
198views more  BMCBI 2005»
13 years 4 months ago
Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....
BMCBI
2005
122views more  BMCBI 2005»
13 years 4 months ago
Finding genomic ontology terms in text using evidence content
Background: The development of text mining systems that annotate biological entities with their properties using scientific literature is an important recent research topic. These...
Francisco M. Couto, Mário J. Silva, Pedro C...