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» Genetic Algorithms for Protein Threading
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PPSC
1997
13 years 6 months ago
Case Studies in Protein Structure Prediction with Real-valued Genetic Algorithms
Accurate and reliable protein structure prediction (PSP) eludes researchers primarily becausethe searchfor theminimumenergyconformeris computationallyintractable. This research di...
Charles E. Kaiser, Laurence D. Merkle, Gary B. Lam...
GECCO
2006
Springer
176views Optimization» more  GECCO 2006»
13 years 8 months ago
A genetic algorithm with backtracking for protein structure prediction
In this paper, we propose a simple genetic algorithm for finding the optimal conformation of a protein using the three-dimensional square HP model. A backtracking procedure is use...
Clayton Matthew Johnson, Anitha Katikireddy
FGCS
2007
106views more  FGCS 2007»
13 years 4 months ago
A parallel hybrid genetic algorithm for protein structure prediction on the computational grid
Solving the structure prediction problem for complex proteins is difficult and computationally expensive. In this paper, we propose a bicriterion parallel hybrid genetic algorith...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...
GECCO
2005
Springer
162views Optimization» more  GECCO 2005»
13 years 10 months ago
Discovering biological motifs with genetic programming
Choosing the right representation for a problem is important. In this article we introduce a linear genetic programming approach for motif discovery in protein families, and we al...
Rolv Seehuus, Amund Tveit, Ole Edsberg
GECCO
2008
Springer
135views Optimization» more  GECCO 2008»
13 years 6 months ago
Evolving sequence patterns for prediction of sub-cellular locations of eukaryotic proteins
A genetic algorithm (GA) is utilised to discover known and novel PROSITE-like sequence templates that can be used to classify the sub-cellular location of eukaryotic proteins. Whi...
Greg Paperin